Author: “Billy (Peng) Zhou”
Lab1:Introduction to R and Reproducible ResearchFile
Lab2:git, GitHub and Rstudio projectsFile
Lab3A:Data Wrangling:Starting with data
Lab3B Data Wrangling:Manipulating, analyzing and exporting data with tidyverse
Lab4 Data wrangling and graphing COVID-19 reporting data (Part 1)
Lab4A Data visualization with ggplot2 (Part 1)
Lab5 Data wrangling and graphing COVID-19 reporting data (Part 2)
Lab5A Data visualization with ggplot2 (Part 2)
Lab5 extra: Interactive Graphs and Animations from the COVID-19 reporting data
Lab6 Data Maps and Interactive Graphs from the COVID-19 reporting data
Lab7 RNA-Seq workflow: gene-level exploratory analysis and differential expression
Lab8: Sequence Alignment, Phylogenetic Analysis and Tree Visualization
Lab9A : Programming in R - Regular Expressions
Lab9B : Programming in R - Control Structures and Functions
Lab10: Population genomics based on high throughput sequencing (HTS)
Lab 11: Microbiome Analysis using dada2 and phyloseq
Lab 12: Network Analysis using Cytoscape and RCy3
Lab 13 : Sprucing up your Rmarkdown and GitHub Page
Application written in R (R Core Team 2015) using the Shiny framework (Chang et al. 2015).